| Year | Overall Winner(s) | Entrant | Car | Distance/Duration | Race Title | Championship | Report | 
| 1967 | .svg.png) Yoshio Otsubo 
 .svg.png) Shihomi Hosoya |  | Toyota 2000GT | 1,000 km (620 mi) | 1000 km Fuji |  |  | 
| 1968 | .svg.png) Hiroshi Fushida 
 .svg.png) Mitsumasa Kanie |  | Toyota 7 | 1,000 km (620 mi) | 1000 km Fuji |  |  | 
| 1969 | .svg.png) Hiroshi Fushida 
 .svg.png) Yoshio Otsubo |  | Toyota 7 | 1,000 km (620 mi) | 1000 km Fuji |  |  | 
| 1970 | .svg.png) Motoharu Kurosawa 
 .svg.png) Kunimitsu Takahashi |  | Datsun 240Z | 1,000 km (620 mi) | 1000 km Fuji |  |  | 
| 1971 | .svg.png) Yoshimasa Kawaguchi 
 .svg.png) Yoshifumi Kikura |  | Porsche 910 | 1,000 km (620 mi) | 1000 km Fuji |  |  | 
| 1972 | .svg.png) Kiyoshi Misaki 
 .svg.png) Nobuhide Tachi |  | Toyota Sprinter Trueno | 1,000 km (620 mi) | 1000 km Fuji |  |  | 
| 1973 | .svg.png) Kiyoshi Misaki 
 .svg.png) Harukuni Takahashi |  | Toyota Celica | 1,000 km (620 mi) | 1000 km Fuji |  |  | 
| 1974 | .svg.png) Hiroshi Fushida 
 .svg.png) Harukuni Takahashi |  | Chevron B21-Ford | 1,000 km (620 mi) | 1000 km Fuji |  |  | 
| 1975 | .svg.png) Nobuhide Tachi 
 .svg.png) Haruhito Yanagida |  | March 73S-BMW | 1,000 km (620 mi) | 1000 km Fuji |  |  | 
| 1976 | .svg.png) Fumiyasu Sato 
 .svg.png) Tetsuji Ozasa |  | March 73S-BMW | 1,000 km (620 mi) | 1000 km Fuji |  |  | 
| 1977 | .svg.png) Yoshimi Katayama 
 .svg.png) Takashi Yorino | .svg.png) Katayama Racing | March 76S-Mazda | 1,000 km (620 mi) | Fuji 1000 Kilometres | Fuji Long Distance Series |  | 
| 1978 | .svg.png) Yoshimi Katayama 
 .svg.png) Tsunehisa Asai | .svg.png) Katayama Racing | March 75S-Mazda | 1,000 km (620 mi) | Fuji 1000 Kilometres | Fuji Long Distance Series |  | 
| 1979 | .svg.png) Hiroshi Fushida 
  Richard Thomas Geck | .svg.png) Fushida Racers | Chevron B36-Mazda | 1,000 km (620 mi) | Fuji 1000 Kilometres | Fuji Long Distance Series |  | 
| 1980 | .svg.png) Keiichi Suzuki 
 .svg.png) Mutsuaki Sanada | .svg.png) Sanada Racing | Chevron B36-BMW | 1,000 km (620 mi) | Fuji 1000 Kilometres | Fuji Long Distance Series |  | 
| 1981 | .svg.png) Naohiro Fujita 
 .svg.png) Fumiyasu Sato 
 .svg.png) Tetsuji Ozasa | .svg.png) Racing Mate Project Team | March 73S-Mazda | 1,000 km (620 mi) | Fuji 1000 Kilometres | Fuji Long Distance Series |  | 
| 1982 | .svg.png) Naoki Nagasaka 
 .svg.png) Fumiyasu Sato | .svg.png) Auto Beaurex Motor Sports | BMW M1 | 1,000 km (620 mi) | All Japan Fuji 1000 Kilometres | Fuji Long Distance Series |  | 
| 1983 | .svg.png) Naohiro Fujita 
 .svg.png) Vern Schuppan | .svg.png) Trust Racing Team | Porsche 956 | 1,000 km (620 mi) | All Japan Fuji 1000 Kilometres | Fuji Long Distance Series |  | 
| 1984 | .svg.png) Kaoru Iida 
 .svg.png) Taku Akikake | .svg.png) Team Taku | Mazda 83C | 1,000 km (620 mi) | All Japan Fuji 1000 Kilometres | Fuji Long Distance Series |  | 
| 1985 | .svg.png) Keiichi Suzuki 
 .svg.png) Vern Schuppan | .svg.png) Trust Racing Team | Porsche 956 | 1,000 km (620 mi) | All Japan Fuji 1000 Kilometres | All Japan Endurance Championship | report | 
| 1986 | .svg.png) Kunimitsu Takahashi 
 .svg.png) Kenji Takahashi | .svg.png) Advan Sports Nova | Porsche 962C | 1,000 km (620 mi) | All Japan Fuji 1000 Kilometres | All Japan Endurance Championship | report | 
| 1987 | .svg.png) Alan Jones 
 .svg.png) Masanori Sekiya 
  Geoff Lees | .svg.png) Toyota Team TOM'S | Toyota 87C | 1,000 km (620 mi) | All Japan Fuji 1000 Kilometres | All Japan Sports Prototype Championship | report | 
| 1988 |  Kris Nissen 
  Bruno Giacomelli |  Leyton House Racing Team | Porsche 962C | 1,000 km (620 mi) | All Japan Fuji 1000 Kilometres | All Japan Sports Prototype Championship | report | 
| 1989 | .svg.png) Keiji Matsumoto 
 .svg.png) Vern Schuppan 
  Eje Elgh | .svg.png) Omron Racing | Porsche 962C | 1,000 km (620 mi) | JAF Grand Prix All Japan Fuji 1000 km | All Japan Sports Prototype Championship | report | 
| 1990 |  Roland Ratzenberger 
 .svg.png) Naoki Nagasaka | .svg.png) Toyota Team SARD | Toyota 89C-V | 1,000 km (620 mi) | All Japan Fuji 1000 Kilometres | All Japan Sports Prototype Championship | report | 
| 1991 | .svg.png) Kazuyoshi Hoshino 
 .svg.png) Toshio Suzuki | .svg.png) Nissan Motorsports | Nissan R91CP | 1,000 km (620 mi) | All Japan Fuji 1000 Kilometres | All Japan Sports Prototype Championship | report | 
| 1992 | .svg.png) Kazuyoshi Hoshino 
 .svg.png) Toshio Suzuki | .svg.png) Nissan Motorsports | Nissan R92CP | 1,000 km (620 mi) | Fuji 1000 Kilometres | All Japan Sports Prototype Championship | report | 
| 1993–1998: Not held | 
| 1999 |  Érik Comas 
  Satoshi Motoyama 
  Masami Kageyama |  NISMO | Nissan R391 | 1,000 km (620 mi) | Le Mans Fuji 1000 Kilometres | Non-championship | report | 
| 2000–2006: Not held | 
| 2007 |  Hideki Noda 
  Shinsuke Yamazaki |  Hitotsuyama Racing | Zytek 04S | 1,000 km (620 mi) | Fuji 1000 km | Japan Le Mans Challenge | report | 
| 2008–2011: Not held | 
| 2012 |  Alexander Wurz 
  Nicolas Lapierre 
  Kazuki Nakajima |  Toyota Racing | Toyota TS030 Hybrid | 6:00:42 | 6 Hours of Fuji | FIA World Endurance Championship | report | 
| 2013 |  Alexander Wurz 
  Nicolas Lapierre 
  Kazuki Nakajima |  Toyota Racing | Toyota TS030 Hybrid | 2:56:05 Race Did Not Start
 (Weather)
 | 6 Hours of Fuji | FIA World Endurance Championship | report | 
| 2014 | .svg.png) Sébastien Buemi 
  Anthony Davidson |  Toyota Racing | Toyota TS040 Hybrid | 6:00:39 | 6 Hours of Fuji | FIA World Endurance Championship | report | 
| 2015 |  Timo Bernhard 
 .svg.png) Mark Webber 
  Brendon Hartley |  Porsche Team | Porsche 919 Hybrid | 6:00:25 | 6 Hours of Fuji | FIA World Endurance Championship | report | 
| 2016 |  Stéphane Sarrazin 
  Mike Conway 
  Kamui Kobayashi |  Toyota Gazoo Racing | Toyota TS050 Hybrid | 6:00:37 | 6 Hours of Fuji | FIA World Endurance Championship | report | 
| 2017 | .svg.png) Sébastien Buemi 
  Anthony Davidson 
  Kazuki Nakajima |  Toyota Gazoo Racing | Toyota TS050 Hybrid | 4:24:50 (Stopped for fog)
 | 6 Hours of Fuji | FIA World Endurance Championship | report | 
| 2018 |  Mike Conway 
  Kamui Kobayashi 
  José María López |  Toyota Gazoo Racing | Toyota TS050 Hybrid | 6:00:21 | 6 Hours of Fuji | FIA World Endurance Championship | report | 
| 2019 | .svg.png) Sébastien Buemi 
  Brendon Hartley 
  Kazuki Nakajima |  Toyota Gazoo Racing | Toyota TS050 Hybrid | 6:00:30 | 6 Hours of Fuji | FIA World Endurance Championship | report | 
| 2020: Not Held | 
| 2021: Cancelled due to COVID-19 pandemic | 
| 2022 | .svg.png) Sébastien Buemi 
  Brendon Hartley 
  Ryō Hirakawa |  Toyota Gazoo Racing | Toyota GR010 Hybrid | 6:01:23 | 6 Hours of Fuji | FIA World Endurance Championship | report | 
| 2023 |  Mike Conway 
  Kamui Kobayashi 
  José María López |  Toyota Gazoo Racing | Toyota GR010 Hybrid | 6:01:17 | 6 Hours of Fuji | FIA World Endurance Championship | report | 
| 2024 |  Kévin Estre 
  André Lotterer 
 .svg.png) Laurens Vanthoor |  Porsche Penske Motorsport | Porsche 963 | 6:00:32 | 6 Hours of Fuji | FIA World Endurance Championship | report |